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Package: theseus-examples (3.3.0-5)

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Experimental package

Warning: This package is from the staging distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it. The package will automatically migrate to the current development distribution, when it has been tested.

superimpose macromolecules using maximum likelihood (examples)

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

This package contains usage examples for theseus.

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