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Package: theseus (3.3.0-5)

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Experimental package

Warning: This package is from the staging distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it. The package will automatically migrate to the current development distribution, when it has been tested.

superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Other Packages Related to theseus

  • depends
  • recommends
  • suggests
  • dep: clustalo
    General purpose multiple sequence alignment program for proteins
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgsl2
    GNU Scientific Library (GSL) -- library package
  • dep: muscle
    Multiple alignment program of protein sequences
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: dialign
    Segment-based multiple sequence alignment
  • sug: kalign
    Global and progressive multiple sequence alignment
  • sug: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • sug: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • sug: t-coffee
    Multiple Sequence Alignment
  • sug: theseus-examples
    superimpose macromolecules using maximum likelihood (examples)

Download theseus

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 410.8 kB1,082.0 kB [list of files]
i386 283.9 kB848.0 kB [list of files]