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[ Source: prime-phylo  ]

Package: prime-phylo (1.0.11-2)

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Maintainer:

Please consider filing a bug before contacting the maintainer directly.

Original Maintainers (usually from Debian):

  • Debian Med Packaging Team (Mail Archive)
  • Erik Sjolund
  • Andreas Tille

It should generally not be necessary for users to contact the original maintainer.

External Resources:

Similar packages:

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Other Packages Related to prime-phylo

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    multiple sequence alignment using partition function posterior probabilities
  • sug: python-biopython
    Python library for bioinformatics (implemented in Python 2)
  • sug: raxml
    Randomized Axelerated Maximum Likelihood of phylogenetic trees
  • sug: treeviewx
    Displays and prints phylogenetic trees

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Architecture Package Size Installed Size Files
amd64 857.5 kB3,522.0 kB [list of files]
i386 875.5 kB3,329.0 kB [list of files]