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[ Source: r-bioc-shortread  ]

Package: r-bioc-shortread (1.22.0-1)

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GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Other Packages Related to r-bioc-shortread

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: libgcc1 (>= 1:4.1.1)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 4.1.1)
    GNU Standard C++ Library v3
  • dep: r-base-core (>= 3.1.1-1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biobase
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics
    generic functions for Bioconductor
  • dep: r-bioc-biocparallel
    BioConductor facilities for parallel evaluation
  • dep: r-bioc-biostrings
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomicalignments
    BioConductor representation and manipulation of short genomic alignments
  • dep: r-bioc-genomicranges
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • dep: r-cran-hwriter
    HTML Writer - Outputs R objects in HTML format
  • dep: r-cran-latticeextra
    GNU R package of additional graphical displays based on lattice
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

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Architecture Package Size Installed Size Files
amd64 4,065.7 kB5,925.0 kB [list of files]
i386 4,068.6 kB5,828.0 kB [list of files]