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[ Source: r-bioc-rsamtools  ]

Package: r-bioc-rsamtools (1.16.1-2)

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Similar packages:

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Other Packages Related to r-bioc-rsamtools

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:4.1.1)
    GCC support library
  • dep: libgomp1 (>= 4.2.1)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 4.6)
    GNU Standard C++ Library v3
  • dep: r-base-core (>= 3.1.0-1) [amd64]
    GNU R core of statistical computation and graphics system
    dep: r-base-core (>= 3.1.1-1) [i386]
  • dep: r-bioc-biocgenerics
    generic functions for Bioconductor
  • dep: r-bioc-biostrings
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomicranges
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-xvector
    BioConductor representation and manpulation of external sequences
  • dep: r-cran-bitops
    GNU R package implementing bitwise operations
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime
  • rec: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 3,057.6 kB4,996.0 kB [list of files]
i386 3,068.5 kB4,885.0 kB [list of files]