» Tanglu » Packages » aequorea » science

Software Packages in "aequorea", Subsection science

3depict (0.0.13-1)
visualisation and analysis for single valued point data
abacas (1.3.1-2)
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (5.3.4.dfsg-3)
A package for electronic structure calculations
abyss (1.3.6-1b1) [non-free]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.01-5)
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-5)
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-5)
visualisation of sequence similarity
aces3 (3.0.6-7b1)
Advanced Concepts in Electronic Structure III
achilles (2-8)
An artificial life and evolution simulator
aeskulap (0.2.2b1-12)
medical image viewer and DICOM network client
aevol (4.2-1)
digital genetics model to run Evolution Experiments in silico
aghermann (1.0-3)
Sleep-research experiment manager
algotutor (0.8.6-1)
program for observing the intermediate steps of algorithm
alien-hunter (1.7-2)
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.0-1)
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.0-1)
example files for ALTree
amap-align (2.2-4)
Protein multiple alignment by sequence annealing
ampliconnoise (1.28-1b1)
Programs for the removal of noise from 454 sequenced PCR amplicons
anfo (0.98-4)
Short Read Aligner/Mapper from MPG
ants (1.9.2+svn680.dfsg-4)
advanced normalization tools for brain and image analysis
apbs (1.4-1)
Adaptive Poisson Boltzmann Solver
aragorn (1.2.36-2)
tRNA and tmRNA detection in nucleotide sequences
arb (5.5-5) [non-free]
Integrated package for sequence database handling and analysis
arb-common (5.5-5) [non-free]
Integrated package for sequence database handling and analysis (data+scripts)
ask (1.0.1-1)
Adaptive Sampling Kit for big experimental spaces
astronomical-almanac (5.6-4)
astronomical almanac - calculate planet and star positions
autodock (
analysis of ligand binding to protein structure
autodock-getdata (
instructions for getData to collect compounds
autodock-test (
test files for AutoDock
autodock-vina (1.1.2-2b1)
docking of small molecules to proteins
autogrid (
pre-calculate binding of ligands to their receptor
autogrid-test (
test files for AutoGrid
avce00 (2.0.0-2)
Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
avogadro (1.1.0-4)
Molecular Graphics and Modelling System
avogadro-data (1.1.0-4)
Molecular Graphics and Modelling System (Data Files)
aweather (0.8.1-1)
Advanced Weather Monitoring Program
bauble (0.9.7-2)
biodiversity collection manager software application
bedtools (2.17.0-1)
suite of utilities for comparing genomic features
bibus (1.5.2-3)
bibliographic database
biogenesis (0.8-1.1)
artificial life program that simulates evolution of organisms
biomaj (1.2.3-3)
biological data-bank updater
biomaj-properties (1.2.3-3)
biological data-bank updater - example properties files
biomaj-watcher (1.2.1-1) [contrib]
biological data-bank updater - web interface
bioperl (1.6.922-1)
Perl tools for computational molecular biology
bioperl-run (1.6.9-2)
BioPerl wrappers: scripts
biosig-tools (1.3.0-2b1)
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-3)
utilities for biological sequence analysis
bist (0.5.2-1)
chemical drawing tool
bkchem (0.13.0-4)
Chemical structures editor
blast2 (1:
Basic Local Alignment Search Tool
blimps-utils (3.9-1) [non-free]
blocks database improved searcher
bodr (10-1)
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-4)
Milkyway@home application for the BOINC client
boinc-app-seti (7.00~svn1933-1)
SETI@home application for the BOINC client
boinc-app-seti-graphics (7.00~svn1933-1)
SETI@home application for the BOINC client (with graphics)
boolector (
SMT solver for bit-vectors and arrays
bowtie (1.0.0-5)
Ultrafast memory-efficient short read aligner
bowtie-examples (1.0.0-5)
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.1.0-2)
ultrafast memory-efficient short read aligner
bowtie2-examples (2.1.0-2)
Examples for bowtie2
boxshade (3.3.1-8)
Pretty-printing of multiple sequence alignments
bppphyview (0.3.0-1)
Bio++ Phylogenetic Viewer
bppsuite (0.8.0-1)
Bio++ program suite
bwa (0.6.2-1)
Burrows-Wheeler Aligner
cain (1.9-7)
simulations of chemical reactions
cain-examples (1.9-7)
simulations of chemical reactions
cain-solvers (1.9-7)
simulations of chemical reactions
camitk-actionstatemachine (3.2.2-1)
pipeline replay application for the CamiTK library
camitk-imp (3.2.2-1)
workbench application for the CamiTK library
cba (0.3.6-4)
Continuous Beam Analysis
cbflib-bin (
utilities to manipulate CBF files
cbmc (4.5-2)
bounded model checker for C and C++ programs
cclib (1.1-1)
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [non-free]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.1-2012-08-27-2)
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-1)
Constant DataBase indexing and retrieval tools for multi-FASTA files
celestia (1.6.1+dfsg-3)
real-time visual space simulation
celestia-common (1.6.1+dfsg-3)
datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.6.1-1) [non-free]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.1+dfsg-3)
real-time visual space simulation (GLUT frontend)
cernlib (20061220+dfsg3-4)
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4)
CERNLIB data analysis suite - main libraries and programs
cernlib-extras (20061220+dfsg3-4)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3)
CERNLIB Monte Carlo libraries
cgns-convert (
CFD General Notation System - Conversion tools
chemical-structures (2.2.dfsg.0-11)
set of molecular structures in open formats
chemtool (1.6.14-1)
chemical structures drawing program
chimeraslayer (20101212+dfsg-1)
detects likely chimeras in PCR amplified DNA
choreonoid (1.1.0+dfsg-6.1)
Integrated robotics GUI environment
choreonoid-data (1.1.0+dfsg-6.1)
Integrated robotics GUI environment - shared data
choreonoid-plugins-base (1.1.0+dfsg-6.1)
Integrated robotics GUI environment - core plug-ins
circos (0.64-1)
plotter for visualizing data
circos-tools (0.16-3)
plotter for visualizing data - helper utilities
clinica (0.3.0-1)
Simple medical records manager
clinica-common (0.3.0-1)
Simple medical records manager (architecture independent files)
clinica-dev (0.3.0-1)
Simple medical records manager (development files)
clinica-plugins (0.3.0-1)
Simple medical records manager (plugins)
clonalframe (1.2-3)
inference of bacterial microevolution using multilocus sequence data
clustalo (1.2.0-1)
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-4)
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-3b1) [non-free]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.1+lgpl-2)
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.52-2) [non-free]
Reimplementation of the Eisen-clustering software
cmtk (2.2.2-2)
Computational Morphometry Toolkit
cnrun (1.1.14-1)
NeuroML-capable neuronal network simulator
code-aster-gui (1.13.1-1)
Graphical user interface for Code_Aster - client
code-aster-run (1.13.1-1)
Graphical user interface for Code_Aster - server
code-saturne (3.2.1-1b1)
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (3.2.1-1b1)
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (3.2.1-1b1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-include (3.2.1-1b1)
General purpose Computational Fluid Dynamics (CFD) software - includes
coinor-cbc (2.8.7-1)
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.15.5-1)
Coin-or linear programming solver
coinor-csdp (6.1.1-1)
A software package for semidefinite programming
coinor-libcbc3 (2.8.7-1)
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl1 (0.58.4-2)
COIN-OR Cut Generation Library
coinor-libclp1 (1.15.5-1)
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils3 (2.9.10-1)
Coin-or collection of utility classes (binaries and libraries)
coinor-libdylp0 (1.6.0-1.1)
Linear programming solver using the dynamic simplex algorithm
coinor-libflopc++0 (1.0.6-3.1b1)
Formulation of Linear Optimization Problems in C++
coinor-libosi1 (0.106.4-1)
COIN-OR Open Solver Interface
coinor-libsymphony3 (5.5.6-1)
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-libvol0 (1.1.7-1)
Coin-or linear programming solver
coinor-symphony (5.5.6-1)
COIN-OR solver for mixed-integer linear programs
concavity (0.1-2)
predictor of protein ligand binding sites from structure and conservation
conservation-code (20110309.0-3)
protein sequence conservation scoring tool
cp2k (2.4.0-2)
Ab Initio Molecular Dynamics
cp2k-data (2.4.0-2)
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.2.2+dfsg-1)
ESO data reduction pipeline for AMBER
cpl-plugin-amber-calib (4.2.2+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (4.11.12+dfsg-3)
ESO data reduction pipeline for FORS
cpl-plugin-fors-calib (4.11.12+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.11.1+dfsg-3)
ESO data reduction pipeline for GIRAFFE
cpl-plugin-giraf-calib (2.11.1+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (1.8.12+dfsg-2)
ESO data reduction pipeline for HAWK-I
cpl-plugin-hawki-calib (1.8.12+dfsg-2)
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-sinfo (2.4.0+dfsg-3)
ESO data reduction pipeline SINFONI
cpl-plugin-sinfo-calib (2.4.0+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for SINFONI
cpl-plugin-uves (5.3.0+dfsg-2)
ESO data reduction pipeline for UVES
cpl-plugin-uves-calib (5.3.0+dfsg-2) [contrib]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (2.9.9+dfsg-2)
ESO data reduction pipeline for VIMOS
cpl-plugin-vimos-calib (2.9.9+dfsg-2) [contrib]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-xsh (2.3.0+dfsg-3)
ESO data reduction pipeline for XSHOOTER
cpl-plugin-xsh-calib (2.3.0+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for XSHOOTER
critterding (1.0-beta12.1-1.2)
Evolving Artificial Life
ctsim (5.2.0-1.1)
Computed tomography simulator
ctsim-help (5.2.0-1.1)
Online help file for CTSim
cufflinks (2.1.1-4) [non-free]
Transcript assembly, differential expression and regulation for RNA-Seq
dans-gdal-scripts (0.18-1.1b1)
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.6.0-15)
OFFIS DICOM toolkit command line utilities
dialign (2.2.1-6)
Segment-based multiple sequence alignment
dialign-tx (1.0.2-5)
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-5)
Segment-based multiple sequence alignment (data files)
dicomnifti (2.31.1-1)
converts DICOM files into the NIfTI format
dicompyler (0.4.1-1-1)
radiation therapy research platform
diet-agent (2.8.0-1b1)
DIET grid middleware - agent
dimbl (0.12-2)
Distributed Memory Based Learner
discosnp (1.0.1-3)
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-3)
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-3)
data files for predictor of disulfide bonds in proteins
dnaclust (3-2)
tool for clustering millions of short DNA sequences
dotur (1.53-2)
distance based OTU and richness estimation
dozzaqueux (3.21-6.1)
simulator for chemical mixtures
dozzaqueux-data (3.21-6.1)
databases for chemical mixtures
drawxtl (5.5-3)
crystal structure viewer
drslib (0.3.0a3-5)
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.1)
Software for Semidefinite Programming
dssp (2.2.1-1)
protein secondary structure assignment based on 3D structure
dx (1:4.4.4-7b1)
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.4.0-1)
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-2)
A program to read/write Arcinfo compressed E00 files
easychem (0.6-8)
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1)
clients to access ECMWF facilities
edfbrowser (1.53-1)
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-1)
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-1.1)
Graphical editor for Code Aster command files
elastix (4.5-2)
toolbox for rigid and nonrigid registration of images
elk-lapw (2.2.5-1)
All-Electron Density-Functional Electronic Structure Code
elki (0.6.0~beta2-1)
Data mining algorithm development framework
elmer (6.1.0.svn.5396.dfsg2-4)
finite element multiphysics suite - binaries
elmer-common (6.1.0.svn.5396.dfsg2-4)
finite element multiphysics suite - architecture-independent files
embassy-domainatrix (0.1.650-1)
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.650-1)
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.650-1)
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.650-2) [non-free]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0-1)
european molecular biology open software suite
emboss-data (6.6.0-1)
data files for the EMBOSS package
emboss-explorer (2.2.0-8)
web-based GUI to EMBOSS
emboss-lib (6.6.0-1)
EMBOSS Libraries
engauge-digitizer (5.2-1)
interactively extracts numbers from bitmap graphs or maps
ent (1.1debian-3)
pseudorandom number sequence test program
epigrass (2.3.1-1)
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.1-2)
A library for wavelet image compression - tools
ergo (3.3.1-2)
Quantum chemistry program for large-scale calculations
esorex (3.10-1)
Execution Tool for European Southern Observatory pipelines
esys-particle (2.2.u2-2b1)
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.3-4+b1)
Binary tools to check, merge and read ETSF files
exonerate (2.2.0-6)
generic tool for pairwise sequence comparison
expeyes-clib (3.1.1-2)
hardware & software framework for developing science experiments
extrema (4.4.5.dfsg-3)
powerful visualization and data analysis tool
fastdnaml (1.2.2-10)
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-3)
faster version of pedigree programs of Linkage
fastqc (0.10.1+dfsg-2)
quality control for high throughput sequence data
fasttree (2.1.7-1)
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1)
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.28-1)
Pipe-oriented frontend to Gnuplot
feel++-apps (1:0.95.0-final-2b1)
A library for the finite element method
ffindex (
simple index/database for huge amounts of small files
figtree (1.4-2)
graphical phylogenetic tree viewer
filo (1.1+2011123001.1)
FILe and stream Operations
fitsverify (4.16-1)
FITS File Format-Verification Tool
fityk (0.9.8-3+b1)
general-purpose nonlinear curve fitting and data analysis
flexbar (2.34-1)
flexible barcode and adapter removal for sequencing platforms
fractalnow (0.8.1-1)
Fast, advanced fractal generator
Free42 is a re-implementation of the HP-42S calculator
freecad (0.13.2800-dfsg-1)
Extensible Open Source CAx program (alpha)
freecontact (1.0.21-1)
fast protein contact predictor
freediams (0.9.0-2)
pharmaceutical drug prescription and interaction manager
freefoam (0.1.0+dfsg-1b1)
programs for Computational Fluid Dynamics (CFD)
freemedforms-common-resources (0.9.0-2)
common data for the FreeMedForms project applications
freemedforms-emr (0.9.0-2)
electronic medical record manager
freemedforms-emr-resources (0.9.0-2)
data for the FreeMedForms EMR
freemedforms-freedata (0.9.0-2)
free extra-data for the FreeMedForms project
freemedforms-i18n (0.9.0-2)
translations of the FreeMedForms project
freemedforms-libs (0.9.0-2)
common libs for the FreeMedForms project
freemedforms-project (0.9.0-2)
FreeMedForms project
freemedforms-theme (0.9.0-2)
theme for the FreeMedForms project
frog (0.12.17-7.1b1)
tagger and parser for Dutch language (runtime)
frogdata (0.4-1)
Data files for Frog
fsl (4.1.9-7) [non-free]
Metapackage for the latest version of FSL
fsl-4.1 (4.1.9-7) [non-free]
analysis tools for FMRI, MRI and DTI brain imaging
ftools-fv (5.3+dfsg-4)
Tool for viewing and editing FITS format files
ftools-pow (5.3+dfsg-4)
Curve plotting and image display interface tool
funtools (1.4.4-6)
Minimal buy-in FITS utility package
fxt-tools (0.2.14-2)
Multithreaded tracing library
g3data (1:1.5.3-2.1)
extract data from scanned graphs
gabedit (2.4.7-1)
graphical user interface to Ab Initio packages
gamgi (0.16.7-1)
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.16.7-1)
General Atomistic Modelling Graphic Interface (data)
garlic (1.6-1.1)
A visualization program for biomolecules
gausssum (
parse and display Gaussian, GAMESS, and etc's output
gbrowse (2.54+dfsg-2tanglu1)
GMOD Generic Genome Browser
gbrowse-calign (2.54+dfsg-2tanglu1)
CAlign helper
gbrowse-data (2.54+dfsg-2tanglu1)
Sample data to use GBrowse
gchempaint (0.14.3-1)
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.3-1)
lightweight crystal structures visualizer
gcu-bin (0.14.3-1)
GNOME chemistry utils (helper applications)
gcu-plugin (0.14.3-1)
GNOME chemistry utils (browser plugin)
gcx (1.3-1.1)
astronomical image processing and photometry gtk+ application
gdal-bin (1.10.1+dfsg-3)
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-5)
molecular and crystal model viewer
gdis-data (0.90-5)
molecular and crystal model viewer (data files)
gdpc (2.2.5-3)
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-3)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11b2)
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11b2)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-9)
Periodic Table viewer
genometools (1.5.1-2)
versatile genome analysis toolkit
genometools-common (1.5.1-2)
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-2)
suite to plan genetic cloning
geographiclib-tools (1.21-1)
A C++ library to solve some geodesic problems -- tools
geotiff-bin (1.3.0+dfsg-3.2)
the GeoTIFF library -- tools
gerris (20110329-dfsg.2-1b1)
Gerris Flow Solver
gerris-mpi (20110329-dfsg.2-1b1)
Gerris Flow Solver
getdata (0.2-1)
management of external databases
gff2aplot (2.0-7)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-4)
produces PostScript graphical output from GFF-files
ghkl (4.0.3-4)
diffractometer computation control application
ginkgocadx (
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-3)
gapped protein motifs from unaligned sequences
gliese (3.0.95-2) [non-free]
stellar data set from the Third Catalogue of Nearby Stars
gmap (2013-07-20-1) [non-free]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (4.5.11-1)
Generic Mapping Tools
gmt-doc-ps (3.4.4-1)
PostScript docs for the Generic Mapping Tools
gmt-manpages (3.4.4-1)
Manpages for the Generic Mapping Tools
gmt-tutorial (3.4-1.1)
Data files needed to reproduce the tutorial examples of GMT
gmt-tutorial-ps (3.4.4-1)
Tutorial for the Generic Mapping Tools (PostScript)
gofigure2 (0.9.0-3)
Tool for visualizing, processing and analysing of bioimages
gperiodic (2.0.10-7)
periodic table application
gpiv (0.6.1-2.1b1)
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2.1b1)
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-3b1)
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-3b1)
command line programs for Particle Image Velocimetry - MPI version
gpx2shp (0.70-1)
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (
Funcube Dongle Pro Plus controller for GNU Radio
grass-core (6.4.3-3)
GRASS GIS core components
grass-gui (6.4.3-3)
GRASS GIS graphical user interfaces
gri (2.12.23-7)
a language for scientific illustration
grinder (0.5.3-3)
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (4.6.5-1)
Molecular dynamics simulator, with building and analysis tools
gromacs-data (4.6.5-1)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (4.6.5-1)
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (4.6.5-1)
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.2.1-1.1)
visual simulator of 1 and 2-dimensional vibrations
gwyddion (2.33-1)
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.33-1)
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.33-1)
plugins for Gwyddion SPM analysis tool
gyoto (0.1.0-2)
General relativistic ray-tracing
h5utils (1.12.1-2)
HDF5 files visualization tools
harminv (1.3.1-9)
extraction of complex frequencies and amplitudes from time series
hdf5-helpers (1.8.11-5b1)
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.8.11-5b1)
Hierarchical Data Format 5 (HDF5) - Runtime tools
hhsuite (2.0.16-1)
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (2.0.16-1)
sensitive protein sequence searching based on HMM-HMM alignment (data)
hmmer (3.1b1-3)
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2-7)
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2-7)
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-1)
prints the date in latin
hpcc (1.4.1-2b1)
HPC Challenge benchmark
htcondor (8.0.5~dfsg.1-1b1)
distributed workload management system
hyantesite (1.3.0-1)
geomatic tool to compute neighbourhood population potential
ifrit (3.4.2-1)
powerful tool for visualizing 3-dimensional data sets
igv (2.0.30-1) [non-free]
Integrative Genomics Viewer
imagej (1.48e+dfsg-1)
Image processing program inspired by NIH Image
imagevis3d (3.0.0-3)
desktop volume rendering application for large data
imview (1.1.9c-12)
Image viewing and analysis application
indigo-utils (1.1.11-2)
Organic Chemistry Toolkit Utilities
infernal (1.1~rc4-2)
inference of RNA secondary structural alignments
itksnap (2.2.0-1.1)
semi-automatic segmentation of structures in 3D images
jalview (2.7.dfsg-3)
multiple alignment editor
jblas (1.2.0-4)
fast linear algebra library for Java
jellyfish (1.1.10-1)
count k-mers in DNA sequences
jemboss (6.6.0-1)
graphical user interface to EMBOSS
jmol (12.2.32+dfsg2-1)
Molecular Viewer
julia (0.2.0+dfsg-5tanglu1)
high-performance programming language for technical computing
kalign (1:2.03+20110620-2)
Global and progressive multiple sequence alignment
kalzium (4:4.11.3-1)
periodic table and chemistry tools
kalzium-data (4:4.11.3-1)
data files for Kalzium
kissplice (1.8.3-1)
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1)
automatic sorting of the samples (spikes) into clusters
kst (2.0.3-1.3)
scientific data plotting tool
kst-data (2.0.3-1.3)
set of data files for kst
kstars (4:4.11.3-5)
desktop planetarium for KDE
kstars-data (4:4.11.3-5)
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9) [non-free]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4)
CERNLIB data analysis suite - KUIP terminal emulator
lammps (0~20131119.git7162cf0-1)
Molecular Dynamics Simulator
last-align (359-1)
genome-scale comparison of biological sequences
lbt (1.2.2-5)
converts from LTL formulas to Büchi automata
lhapdf-pdfsets-minimal (5.9.1-3)
Minimal PDF Sets of LHAPDF
libarb (5.5-5) [non-free]
Integrated package for sequence database handling and analysis
libcamitk3 (3.2.2-1)
Computer Assisted Medical Intervention Tool Kit - runtime
libclhep2.1 (
CLHEP: A Class Library for High Energy Physics
libclinica0 (0.3.0-1)
Simple medical records manager (shared library)
libej0 (3.1.1-2)
hardware & software framework for developing science experiments
libgeotiff-epsg (1.3.0-1) [non-free]
the GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (3.0.0-2b1)
Molecular Modelling Library (data files)
libgnuradio-fcdproplus0 (
Funcube Dongle Pro Plus controller for GNU Radio
libgrits5 (0.8.1-1)
Grits is a Virtual Globe library
libgyoto1 (0.1.0-2)
General relativistic geodesic integration and ray-tracing
libkst2core2 (2.0.3-1.3)
kst core library
libkst2math2 (2.0.3-1.3)
kst math library
libkst2widgets2 (2.0.3-1.3)
kst widgets library
liblas-bin (1.2.1-5.1b1)
ASPRS LiDAR data translation toolset
libliggghts2 (2.3.8-1b1)
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (1.8+dfsg-1)
Standalone applications for LIBLINEAR
libmed-tools (3.0.6-2b1)
Runtime tools to handle MED files
libocas-tools (0.93-1)
Standalone applications implementing the OCAS solver
libopenmeeg1 (2.0.0.dfsg-5.1)
library for solving EEG and MEG forward and inverse problems
libpwiz-tools (3.0.4624-7)
ProteoWizard command line tools
libqtpropertybrowser3 (3.2.2-1)
Qt Property Browser Library - runtime
librsl1 (1.43-1)
TRMM Radar Software Library
libsilo-bin (4.8-13b1)
Utilities to manipulate libsilo files
libstxxl1 (1.3.1-5)
C++ STL drop-in replacement for extremely large datasets
libxy-bin (0.8-1+b1)
xylib - utilities
libyade (1.07.0-2)
Platform for discrete element modeling. Libraries
liggghts (2.3.8-1b1)
Open Source DEM Particle Simulation Software.
litl-tools (0.1.1+dfsg-3)
Lightweight Trace Library - tools
logcentral (2.7-1)
Logging service for distributed applications
logcentral-tools (2.7-1)
Logging service for distributed applications
logol (1.6.9-2)
Pattern matching tool using Logol language
logol-bin (1.6.9-2)
Pattern matching tool using Logol language
loki (
MCMC linkage analysis on general pedigrees
looptools (2.8-1)
Integral Evaluator of One-loop Feynman Diagram
ltrsift (1.0.2-1)
postprocessing and classification of LTR retrotransposons
ltrsift-examples (1.0.2-1)
example data for LTRsift
lutefisk (1.0.7+dfsg-1)
de novo interpretation of peptide CID spectra
macs (
Model-based Analysis of ChIP-Seq on short reads sequencers
mafft (7.127-1)
Multiple alignment program for amino acid or nucleotide sequences
mapsembler2 (2.0.5+dfsg-2)
bioinformatics targeted assembly software
maq (0.7.1-5)
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-6)
graphical read alignment viewer for short gene sequences
massxpert (3.4.1-1)
linear polymer mass spectrometry software
massxpert-data (3.4.1-1)
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2b1) [contrib]
IO library for the GDF -- Matlab interface
maude (2.6-4)
high-performance logical framework
mayavi2 (4.1.0-1)
scientific visualization package for 2-D and 3-D data
mbt (3.2.10-4)
memory-based tagger-generator and tagger
mbtserver (0.7-3)
Server extensions for the MBT tagger
meep (1.1.1-8)
software package for FDTD simulation
meep-lam4 (1.1.1-10)
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi-default (1.1.1-10b1)
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.1.1-10)
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.1.1-9b1)
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-1)
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-1)
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.1-3b2)
map editor for OpenStreetMap.org
metastudent (1.0.10-1)
predictor of Gene Ontology terms from protein sequence
metastudent-data (1.0.1-2)
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-1)
predictor of Gene Ontology terms from protein sequence - data #2
mgltools-bhtree (1.5.7~rc1~cvs.20130519-1) [non-free]
Bhtree library extension module
mgltools-cadd (1.5.7~rc1~cvs.20130519-2) [non-free]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1~cvs.20130519-1) [non-free]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7~rc1~cvs.20130519-1) [non-free]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7~rc1~cvs.20130519-1) [non-free]
Python library for geometric analyses
mgltools-mglutil (1.5.7~rc1~cvs.20130519-1) [non-free]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7~rc1~cvs.20130519-1) [non-free]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7~rc1~cvs.20130519-1) [non-free]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7~rc1~cvs.20130519-1) [non-free]
Opengltk Python extension
mgltools-pmv (1.5.7~rc1~cvs.20130519-1) [non-free]
Python-based Molecular Viewer
mgltools-pmv-test (1.5.7~rc1~cvs.20130519-1) [non-free]
Python-based Molecular Viewer (functionality tests)
mgltools-pyautodock (1.5.7~rc1~cvs.20130519-1) [non-free]
Python implementation of autodock
mgltools-pybabel (1.5.7~rc1~cvs.20130519-1) [non-free]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7~rc1~cvs.20130519-1) [non-free]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7~rc1~cvs.20130519-1) [non-free]
Python-based viewer of molecular structures
mgltools-sff (1.5.7~rc1~cvs.20130519-1) [non-free]
Simple Force Field for Python
mgltools-support (1.5.7~rc1~cvs.20130519-1) [non-free]
Update mechanism of MGLTools
mgltools-symserv (1.5.7~rc1~cvs.20130519-1) [non-free]
Symetry server
mgltools-utpackages (1.5.7~rc1~cvs.20130519-1) [non-free]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7~rc1~cvs.20130519-1) [non-free]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7~rc1~cvs.20130519-1) [non-free]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7~rc1~cvs.20130519-1) [non-free]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7~rc1~cvs.20130519-1) [non-free]
Volume rendering Python package
mgltools-webservices (1.5.7~rc1~cvs.20130519-1) [non-free]
webservices for components of autodocktools
mia-tools (2.0.12-1)
Command line tools for gray scale image processing
mia-viewit (1.0.0-1)
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.10-1)
Tools for landmark picking in 3D volume data sets
microbiomeutil (20101212+dfsg-1)
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg-1)
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
minc-tools (2.2.00-3)
MNI medical image format tools
minia (1.6067+dfsg-2)
short-read biological sequence assembler
minisat (1:2.2.1-4)
Fast and lightweight SAT solver
minisat+ (1.0-2)
solver for pseudo-Boolean constraints
mipe (1.1-4)
Tools to store PCR-derived data
mira-assembler (3.9.18-1tanglu1)
Whole Genome Shotgun and EST Sequence Assembler
mira-examples (3.9.18-1tanglu1)
files to experiment with the mira assembler
mitools (1.8.5-2)
view, convert and perform basic maths with medical image datasets
mldemos (0.5.1-3b1)
Machine Learning Demos (MLDemos) with Visualization
mlv-smile (1.47-3)
Find statistically significant patterns in sequences
mmass (5.5.0-2)
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-2)
Mass spectrometry tool for proteomics - extension modules
mobyle (1.5.1+dfsg-1)
Web portal that provides web forms for command-line software
mobyle-programs (5.1.1-1)
Program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-1)
program tutorials for the mobyle portal
mobyle-utils (1.5.1+dfsg-1)
binary tools used by Mobyle
molds (0.2.0-1)
Semi-empirical electronic structure and molecular dynamics
mona (1.4-13-3)
theorem prover based on automata
montecarlo-base (20061220+dfsg3-3)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6)
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.1.1-1)
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.1.1-1)
Multi-OpenRobot Simulation Engine
mothur (1.24.1-1)
sequence analysis suite for research on microbiota
mpb (1.4.2-18b1)
MIT Photonic-Bands
mpb-mpi (1.4.2-18b1)
MIT Photonic-Bands, parallel (mpich) version
mpich2python (2.9.2-5b1)
MPI-enhanced Python interpreter (MPICH2 based version)
mpqc (2.3.1-16)
Massively Parallel Quantum Chemistry Program
mpqc-support (2.3.1-16)
Massively Parallel Quantum Chemistry Program (support tools)
mrbayes (3.2.1+dfsg-2b1)
Bayesian Inference of Phylogeny
mrbayes-mpi (3.2.1+dfsg-2b1)
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.0.6-1)
medical image file conversion utility
mricron (0.20120505.1~dfsg.1-1)
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20120505.1~dfsg.1-1)
data files for MRIcron
mrpt-apps (1:1.0.2-1)
Mobile Robot Programming Toolkit - Console and GUI applications
mrs (6.0.4+dfsg-1)
Information Retrieval System for Biomedical databanks
mrtrix (0.2.11-1)
diffusion-weighted MRI white matter tractography
mssstest (3.0-3) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23~dfsg-2)
Efficient sequence alignment of full genomes
muscle (1:3.8.31-1)
Multiple alignment program of protein sequences
music-bin (1.0.7-1.2b1)
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.1-3)
multiple structural alignment of proteins
mustang-testdata (3.2.1-3)
multiple structural alignment of proteins, test data
nast-ier (20101212+dfsg-1)
NAST-based DNA alignment tool
nautic (1.5-1)
computation of observer position in astro-navigation
ncbi-blast+ (2.2.28-2)
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.2.28-2)
NCBI Blast legacy call script
ncbi-epcr (2.3.12-1-1)
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20120620-7)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-1)
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20120620-7)
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20120620-7)
NCBI libraries for biology applications (X-based utilities)
nco (4.0.9-1+b1)
command-line operators to analyze netCDF files
ncoils (2002-4)
coiled coil secondary structure prediction
ncview (1.93g-1+b3 [i386], 1.93g-1+b2 [amd64])
A X11 visual browser for NetCDF format files
necpp (1.5.0+cvs20101003-2.1)
NEC2 Evolution Antenna Modelling System
neobio (0.0.20030929-1.1)
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.1.3-7)
Programs for reading and writing NetCDF files
nexus-tools (4.3.2-svn1919-1)
NeXus scientific data file format - applications
nifti2dicom (0.4.5-1)
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.5-1)
data files for nifti2dicom
njplot (2.4-2b1)
phylogenetic tree drawing program
node-sphericalmercator (1.0.1-2)
Spherical Mercator projection support for NodeJS
node-srs (0.3.2+ds1-1b1)
spatial reference library for Node.js
norsnet (1.0.17-1)
tool to identify unstructured loops in proteins
norsp (1.0.6-1)
predictor of non-regular secondary structure
numdiff (5.8.1-1)
Compare similar files with numeric fields
nwchem (6.3+r1-1b1)
High-performance computational chemistry software
nwchem-data (6.3+r1-1b1)
High-performance computational chemistry software (data files)
oar-admin (2.5.2-4)
OAR batch scheduler administration tools package
oar-api (2.5.2-4)
transitional dummy package
oar-common (2.5.2-4)
OAR batch scheduler common package
oar-node (2.5.2-4)
OAR batch scheduler node package
oar-restful-api (2.5.2-4)
oar-server (2.5.2-4)
OAR batch scheduler server package
oar-server-mysql (2.5.2-4)
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.2-4)
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.2-4)
OAR batch scheduler user package
oar-user-mysql (2.5.2-4)
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.2-4)
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.2-4)
OAR batch scheduler visualization tool package
oasis3 (3.3.beta.dfsg.1-9)
Coupler for exchanging fields between components of Earth system models
oasis3-examples (3.3.beta.dfsg.1-9)
Example models for the OASIS climate model coupler
obdgpslogger (0.16-1.2)
suite of tools to log OBDII and GPS data
objcryst-fox (
Free Objects for Xtallography
oce-draw (0.12-4)
OpenCASCADE Community Edition CAE platform shared library
octave-biosig (1.3.0-2b1)
Octave bindings for BioSig library
octave-gdf (0.1.2-2b1)
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-3)
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (
toolbox for vision research -- Octave bindings
odin (1.8.5-2)
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-7)
Open Geographic Datastore Interface Library -- utilities
openbabel (2.3.2+dfsg-1b1)
Chemical toolbox utilities (cli)
openbabel-gui (2.3.2+dfsg-1b1)
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1)
MPEG2 transport stream data generator and packet manipulator
openmeeg-tools (2.0.0.dfsg-5.1)
openmeeg library -- command line tools
openmpipython (2.9.2-5b1)
MPI-enhanced Python interpreter (OpenMPI based version)
openms (1.11.1-3)
package for LC/MS data management and analysis
openms-common (1.11.1-3)
package for LC/MS data management and analysis - shared data
openmx (3.5-1)
Package for nano-scale material simulations
openrocket (13.11.1)
Model Rocket Simulator
opensesame (0.27.4-2)
graphical experiment builder for the social sciences
openturns-examples (1.2-2)
examples of OpenTURNS functionalities
openturns-validation (1.2-2)
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-3)
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-3)
3D Universe Simulator data files
opj2dat (20080225-2.1)
OriginLab Origin project files to data files converter
optgeo (2.15-3)
simulator for geometrical optics
opticalraytracer (3.2-1.1)
Virtual lens design workshop
origami (0.7.4-1)
command-line management tool for Folding @ Home clients
orthanc (0.7.2-1)
RESTful DICOM server for healthcare and medical research
otf-trace (1.12.4+dfsg-3b1)
Open Trace Format support library - development files
paje.app (1.98-1+b1)
generic visualization tool (Gantt chart and more)
paml (4.7-1) [non-free]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraview (4.0.1-1b1)
Parallel Visualization Application
paw (1:2.14.04.dfsg.2-9b1)
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9b1)
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9b1)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9b1)
Physics Analysis Workstation examples and tests
pdb2pqr (1.8+dfsg-1)
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.0.1+dfsg-8)
Scientific workflow management system for Condor
perlprimer (1.1.21-1)
Graphical design of primers for PCR
phylip (1:3.695-1) [non-free]
package of programs for inferring phylogenies
phyml (2:20120412-2)
Phylogenetic estimation using Maximum Likelihood
picard-tools (1.100-1)
Command line tools to manipulate SAM and BAM files
picosat (954-1)
SAT solver with proof and core support
planets (0.1.13-14b1)
Gravitation simulation of planetary bodies
plastimatch (1.5.11+dfsg0-1)
medical image reconstruction and registration
plink (1.07-3)
whole-genome association analysis toolset
poa (2.0+20060928-3)
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1)
population genetic software
pp-popularity-contest (1.0.6-1)
PredictProtein popularity contest
praat (5.3.57+dfsg-1)
program for speech analysis and synthesis
prank (0.0.130820-1)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-1)
prediction and analysis of protein nuclear localization signals
predictprotein (1.0.94-1)
suite of protein sequence analysis tools
prime-phylo (1.0.11-1b1)
bayesian estimation of gene trees taking the species tree into account
primer3 (2.3.5-1)
Tool to design flanking oligo nucleotides for DNA amplification
proalign (0.603-1)
Probabilistic multiple alignment program
probabel (0.4.2-2)
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.2-2)
Example files for ProbABEL
probalign (1.4-3)
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-9)
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-9)
Extra programs from the probcons package
proda (1.0-8)
multiple alignment of protein sequences
profbval (1.0.22-1)
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-1)
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-1)
neural network architecture for profbval
profnet-chop (1.0.22-1)
neural network architecture for profchop
profnet-con (1.0.22-1)
neural network architecture for profcon
profnet-isis (1.0.22-1)
neural network architecture for profisis
profnet-md (1.0.22-1)
neural network architecture for metadisorder
profnet-norsnet (1.0.22-1)
neural network architecture for norsnet
profnet-prof (1.0.22-1)
neural network architecture for profacc
profnet-snapfun (1.0.22-1)
neural network architecture for snapfun
profphd (1.0.40-1)
secondary structure and solvent accessibility predictor
profphd-net (1.0.22-1)
neural network architecture for profphd
profphd-utils (1.0.10-1)
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-1)
per-residue prediction of bacterial transmembrane beta barrels
proj-bin (4.8.0-2)
Cartographic projection library (tools)
prooftree (0.12-1)
proof-tree visualization for Proof General
psi3 (3.4.0-5)
Quantum Chemical Program Suite
psi4 (4.0~beta5+dfsg-2)
Quantum Chemical Program Suite
psi4-data (4.0~beta5+dfsg-2)
Quantum Chemical Program Suite (data files)
psychopy (1.77.02.dfsg-1)
environment for creating psychology stimuli in Python
psychtoolbox-3-common (
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (
toolbox for vision research -- arch-specific parts
pyfai (0.3.5-1)
python library for Fast Azimuthal Integration
pyformex (0.8.6-4)
program to create 3D geometry from Python scripts.
pyformex-lib (0.8.6-4)
program to create 3D geometry from Python scripts.
pymca (4.7.1+dfsg-1)
Python applications and toolkit for X-ray fluorescence analysis
pymca-data (4.7.1+dfsg-1)
Architecture independent data files for PyMca
pymol (
Molecular Graphics System
python3-fitbitscraper (0.1-1)
Python library for scraping the FitBit website for data
python3-morse-simulator (1.1.1-1)
Multi-OpenRobot Simulation Engine
qfits-tools (6.2.0-6)
FITS manipulation tools
qgis (2.0.1-0tanglu1)
Geographic Information System (GIS)
qgis-api-doc (2.0.1-0tanglu1)
QGIS API documentation
qgis-common (2.0.1-0tanglu1)
QGIS - architecture-independent data
qgis-mapserver (2.0.1-0tanglu1)
QGIS mapserver
qgis-plugin-grass (2.0.1-0tanglu1)
GRASS plugin for QGIS
qgis-plugin-grass-common (2.0.1-0tanglu1)
GRASS plugin for QGIS - architecture-independent data
qgis-providers (2.0.1-0tanglu1)
collection of data providers to QGIS
qgis-providers-common (2.0.1-0tanglu1)
collection of data providers to QGIS - architecture-independent files
qgis-sqlanywhere (2.0.1-0tanglu1)
QGIS sql anywhere plugin and provider
qiime (1.8.0+dfsg-2)
Quantitative Insights Into Microbial Ecology
qmc (0.94-3+b1 [i386], 0.94-3 [amd64])
Quine McClusky Simplification Tool
qnifti2dicom (0.4.5-1)
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.0.r31-1)
cardiovascular disease risk calculator
qthid-fcd-controller (3.1-6)
Funcube Dongle controller
quantum-espresso (5.0.2-5)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (5.0.2-5)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
quitcount (2.0-3)
Small tool which may help yourself quit smoking
qutemol (0.4.1~cvs20081111-3)
interactive visualization of macromolecules
rasmol (
Visualize biological macromolecules
raster3d (3.0-2-4b1)
tools for generating images of proteins or other molecules
rate4site (3.0.0-1)
detector of conserved amino-acid sites
raxml (7.2.8-2)
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.1.0-1b1)
parallel genome assemblies for parallel DNA sequencing
ray-extra (2.1.0-1b1)
Scripts and XSL sheets for post-processing
rdkit-data (201306-2)
Collection of cheminformatics and machine-learning software (data files)
readseq (1-11)
Conversion between sequence formats
reprof (1.0.1-1)
protein secondary structure and accessibility predictor
rnahybrid (2.1.1-2)
Fast and effective prediction of microRNA/target duplexes
robot-player (3.0.2+dfsg-4.1)
Networked server for robots and sensors
robot-player-dev (3.0.2+dfsg-4.1)
Networked server for robots and sensors - development package
rtax (0.984-2)
Classification of sequence reads of 16S ribosomal RNA gene
saga (2.1.0+dfsg-1b1)
System for Automated Geoscientific Analyses
saint (2.3.4+dfsg-2)
Significance Analysis of INTeractome
samtools (0.1.19-1)
processing sequence alignments in SAM and BAM formats
saods9 (7.2+dfsg-4)
Image display tool for astronomy
saods9-blt (7.2+dfsg-4)
BLT subpackage for saods9
saods9-data (7.2+dfsg-4)
Image display tool for astronomy (shared data)
sat4j (2.3.2-1)
Efficient library of SAT solvers in Java
savi (1.4.6-1)
satellite constellation visualisation
sbmltoolbox (4.1.0-1)
libsbml toolbox for octave and matlab
science-astronomy (1.0)
Debian Science Astronomy packages
science-astronomy-dev (1.0)
Debian Science Astronomy-dev packages
science-biology (1.0)
Debian Science Biology packages
science-chemistry (1.0)
Debian Science Chemistry packages
science-config (1.0)
Debian Science Project config package
science-dataacquisition (1.0)
Debian Science data acquisition packages
science-dataacquisition-dev (1.0)
Debian Science data acquisition development packages
science-distributedcomputing (1.0)
Debian Science Distributed Computing packages
science-electronics (1.0)
Debian Science Electronics packages
science-electrophysiology (1.0)
Debian Science packages for Electrophysiology
science-engineering (1.0)
Debian Science Engineering packages
science-engineering-dev (1.0)
Debian Science Engineering-dev packages
science-geography (1.0)
Debian Science Geography packages
science-highenergy-physics (1.0)
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.0)
Debian Science High Energy Physics development packages
science-imageanalysis (1.0)
Debian Science image analysis packages
science-linguistics (1.0)
Debian Science Linguistics packages
science-machine-learning (1.0)
Debian Science Machine Learning packages
science-mathematics (1.0)
Debian Science Mathematics packages
science-mathematics-dev (1.0)
Debian Science Mathematics-dev packages
science-meteorology (1.0)
Debian Science Meteorology packages
science-meteorology-dev (1.0)
Debian Science Meteorology-dev packages
science-nanoscale-physics (1.0)
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.0)
Debian Science Nanoscale Physics development packages
science-neuroscience-cognitive (1.0)
Debian Science packages for Cognitive Neuroscience
science-neuroscience-modeling (1.0)
Debian Science packages for modeling of neural systems
science-numericalcomputation (1.0)
Debian Science Numerical Computation packages
science-physics (1.0)
Debian Science Physics packages
science-physics-dev (1.0)
Debian Science Physics-dev packages
science-psychophysics (1.0)
Debian Science packages for Psychophysics
science-robotics (1.0)
Debian Robotics packages
science-simulations (1.0)
Debian Science Simulation packages
science-statistics (1.0)
Debian Science Statistics packages
science-tasks (1.0)
Debian Science tasks for tasksel
science-typesetting (1.0)
Debian Science typesetting packages
science-viewing (1.0)
Debian Science data visualisation packages
seaview (1:4.4.2-1) [non-free]
Multiplatform interface for sequence alignment and phylogeny
seq-gen (1.3.3-1) [non-free]
simulate the evolution of nucleotide or amino acid sequences
seqan-apps (1.4.1-3)
C++ library for the analysis of biological sequences
seqtk (1.0-1)
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.8.6+dfsg-1)
Source extractor for astronomical images
shelxle (1.0.649-1)
graphical user interface for SHELXL
shogun-cmdline-static (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-csharp-modular (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-elwms-static (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-java-modular (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-lua-modular (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-python-modular (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-python-static (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-r-static (1.1.0-6b1)
Large Scale Machine Learning Toolbox
shogun-ruby-modular (1.1.0-6b1)
Large Scale Machine Learning Toolbox
sibsim4 (0.20-2)
align expressed RNA sequences on a DNA template
sift (4.0.3b-4) [non-free]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-3)
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-1+b2)
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20121010-1)
tool for aligning cDNA and genomic DNA
simgrid (3.9~rc1-1)
Toolkit for scalable simulation of distributed applications
skycat (3.1.2+starlink1~b-3)
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.35-1.1)
produce plots and drawings through Xfig's fig2dev in S-Lang
snap (2010-07-28-2)
location of genes from DNA sequence with hidden markov model
snaphu (1.4.2-2) [non-free]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
snp-sites (1.5.0-1)
Binary code for the package snp-sites
soapdenovo (1.05-1)
short-read assembly method to build de novo draft assembly
soapdenovo2 (240+dfsg-1)
short-read assembly method to build de novo draft assembly
spass (3.7-3)
An automated theorem prover for first-order logic with equality
spatialite-bin (3.1.0b-2)
Geospatial extension for SQLite - tools
spd (1.3.0-1)
Synchrotron image corrections and azimuthal integration
squizz (0.99b+dfsg-2)
Converter for genetic sequences and alignments
sra-toolkit (2.1.7a-1)
utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev (2.1.7a-1)
Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 (2.1.7a-1)
Libraries for the SRA Toolkit
ssake (3.8-2)
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8-2)
example data for SSAKE, a genomic assembler of short reads
staden-io-lib-utils (1.13.2-3)
programs for maniuplating DNA sequencing files
stardata-common (0.8)
Common framework to manage astronomy packages
starplot (0.95.5-7)
3-dimensional perspective star map viewer
starpu-examples (1.0.5+dfsg-1b1)
Task scheduler for heterogeneous multicore machines - exs
stellarium (0.12.4-1)
real-time photo-realistic sky generator
stellarium-data (0.12.4-1)
Stellarium data files
step (4:4.11.3-1)
interactive physical simulator for KDE
stimfit (0.10.18-1.1+b1)
A program for viewing and analyzing electrophysiological data
sumo (0.19.0+dfsg-2)
Simulation of Urban MObility (SUMO)
survex (1.2.8-2)
cave surveying and mapping software
survex-aven (1.2.8-2)
sophisticated cave survey viewer for Survex
survex-svxedit (1.2.8-2)
survey data editor for Survex
swarp (2.19.1-1)
resample and co-add together FITS images
virtual package provided by suckless-tools
swe-basic-data (
basic data files for the libswe package
swe-standard-data (00004-1)
standard data for the Swiss Ephemeris
syrthes (3.4.3-dfsg1-7)
Transient thermal simulations in complex solid geometries
t-coffee (10.00.r1613-1)
Multiple Sequence Alignment
t-coffee-examples (10.00.r1613-1)
annotated examples for the use of T-Coffee
tabix (0.2.6-1)
generic indexer for TAB-delimited genome position files
tandem-mass (1:2013.09.01-1)
mass spectrometry software for protein identification
tcd-utils (20061127-2)
convert Tide Constituent Database (TCD) files
tcl-fitstcl (2.3-2)
Tcl interface to FITS files
terraintool (1.12a-1)
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6b1)
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6b1)
simulation of 3D optical systems using FDTD on MPI clusters
therion (5.3.11-2)
Cave surveying - 2D and 3D drawing software
therion-viewer (5.3.11-2)
Cave surveying - 3D viewer for therion models
theseus (2.0.6-1)
superimpose macromolecules using maximum likelihood
tigr-glimmer (3.02-3)
Gene detection in archea and bacteria
timbl (6.4.4-4)
Tilburg Memory Based Learner
timblserver (1.7-4)
Server extensions for Timbl
tm-align (20130511+dfsg-1)
structual alignment of proteins
tophat (2.0.10-1)
fast splice junction mapper for RNA-Seq reads
topp (1.11.1-3)
set of programs implementing The OpenMS Proteomic Pipeline
transcalc (0.14-5)
microwave and RF transmission line calculator
transtermhp (2.09-2)
find rho-independent transcription terminators in bacterial genomes
travis (130919-1)
trajectory analyzer and visualizer
tree-ppuzzle (5.2-7b1)
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-7b1)
Reconstruction of phylogenetic trees by maximum likelihood
treeview ( [contrib]
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-2)
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [non-free]
High-quality 2-D mesh generator binary programs
trimmomatic (0.30+dfsg-1)
flexible read trimming tool for Illumina NGS data
tunnelx (20110801-5.1)
Cave Survey drawing software
twms (0.05t-1)
tiny web map service
uc-echo (1.12-3)
error correction algorithm designed for short-reads from NGS
ucto (0.5.3-3.1b1)
Unicode Tokenizer
uhd-host (3.5.5-1)
universal hardware driver for Ettus Research products
units-filter (3.5-3)
Parser for expressions concerning physical values
urg-utils (0.8.18-1)
utilities for Hokuyo URG/UTM laser range scanners
v-sim (3.7.0-2)
Visualize atomic structures
v-sim-common (3.7.0-2)
Visualize atomic structures (support files)
v-sim-plugins (3.7.0-2)
Plugins for V_Sim (a 3D visualization package)
vcftools (0.1.11+dfsg-1)
Collection of tools to work with VCF files
velvet (1.2.10+dfsg-1)
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg-1)
Example data for the Velvet sequence assembler
veusz (1.15-1b1)
2D scientific plotting application with graphical interface
veusz-helpers (1.15-1b1)
Architecture-specific helper module for Veusz
viewmol (2.4.1-20)
A graphical front end for computational chemistry programs.
visp-images-data (2.8.0-1)
visual servoing library - reference files
vistrails (2.0.alpha~1-3)
Science visualisation workflow toolkit
vmtk (1.0.1-1) [non-free]
the Vascular Modeling Toolkit
volview (3.4+dfsg-1)
Advanced volume visualization tool
vowpal-wabbit (7.3-1)
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-1+b1)
processing, statistical analysis, and display of brain imaging data
wcslib-tools (4.19-3)
Command line tools utilizing wcslib
wcstools (3.8.7-2)
Handle the WCS of a FITS image
weka (3.6.10-2)
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn953-1)
Web-based customizable weather station software
wigeon (20101212+dfsg-1)
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-14)
comparison of biopolymers, commonly DNA and protein sequences
xbs (0-8)
3-d models and movies of molecules
xcrysden (1.5.53-1)
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.53-1)
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-2)
Chemical structures and reactions editor
xflr5 (6.07+svn513-1)
analysis tool for airfoils
xfoil (6.97.dfsg-5)
program for the design and analysis of subsonic airfoils
xmakemol (5.16-7)
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-7)
program for visualizing atomic and molecular systems (OpenGL)
xmds (1.6.6-7)
eXtensible Multi-Dimensional Simulator
xmds2 (2.2.0+dfsg1-1)
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.15-3)
Tools for seamless communication between Unix programs
xplot (1.19-9)
simple on-screen x-y column data plotter
xplot-xplot.org (
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1)
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13-1)
provides tide and current predictions
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20100529-1)
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [non-free]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.31-3)
data thief for scientists
yade (1.07.0-2)
Platform for discrete element modeling
yale (5.0.95-2) [non-free]
stellar data set from the Yale Bright Star Catalog
ygraph (0.16~cvs20090218-1.2)
plot and animate data sets
yorick (2.2.02+dfsg-6b1)
interpreted language and scientific graphics
yorick-av (0.0.2-1)
write movies from Yorick in various formats
yorick-cubeview (2.2-2)
3D FITS data viewer specialized in spectro-imaging
yorick-curses (0.1-6)
interface to the (n)curses library for the Yorick language
yorick-data (2.2.02+dfsg-6b1)
interpreted library for the Yorick language
yorick-dev (2.2.02+dfsg-6b1)
development files for the Yorick interpreted language
yorick-full (2.2.02+dfsg-6b1)
full installation of the Yorick interpreter and add-ons
yorick-gl (1.1+cvs20070922+dfsg-6.1b1)
OpenGL 3D graphics support for the Yorick language
yorick-gy (0.0.5-1)
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (0.1.0-2)
General relativistic geodesic integration for the Yorick language
yorick-hdf5 (0.8.0-4)
Hierarchical Data Format 5 interface for the Yorick language
yorick-imutil (0.5.7-3)
fast image manipulation routines for the Yorick language
yorick-mira (0.9.10+dfsg-1)
optical interferometry image reconstruction within Yorick
yorick-ml4 (0.6.0-3)
Matlab file format support for the Yorick language
yorick-mpeg (0.1-3)
MPEG output support for the Yorick language
yorick-mpy-common (2.2.02+dfsg-6b1)
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.02+dfsg-6b1)
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.02+dfsg-6b1)
Message Passing Yorick (OpenMPI build)
yorick-optimpack (1.3.2+dfsg-1)
optimization of large scale problems for the Yorick language
yorick-soy (1.4.0-3)
sparse matrix operations for the Yorick language
yorick-spydr (0.8.2-3)
FITS image display and simple analysis
yorick-svipc (0.14-2b1)
interprocess communication (shared memory...) for Yorick
yorick-yao (4.9.1-2)
Yorick-based adaptive optics system simulator
yorick-yeti (6.3.2-3)
utility plugin for the Yorick language
yorick-yeti-fftw (6.3.2-3)
FFT plugin for the Yorick language
yorick-yeti-gsl (6.3.2-3)
GSL special functions plugin for the Yorick language
virtual package provided by yorick-ygsl
yorick-yeti-regex (6.3.2-3)
POSIX regular expressions for the Yorick language
yorick-yeti-tiff (6.3.2-3)
TIFF image format input for the Yorick language
yorick-ygsl (1.1.1-1)
GSL special functions plugin for the Yorick language
yorick-yutils (1.5.2-1)
various utilities for the Yorick language
yorick-z (1.2.0+cvs20080115-5)
zlib, jpeg and png support for the Yorick language
z88 (13.0.0+dfsg2-3)
Finite Element Analysis Program - runtime
z88-data (13.0.0+dfsg2-3)
Finite Element Analysis Program - data
zalign (0.9.1-1b1)
parallel local alignment of biological sequences
zegrapher (2.0-2)
plotting mathematical functions and sequences on the plane
zimpl (3.3.1+dfsg-1)
mathematical modeling language for optimization problems
ztex-bmp (20120314-2)
universal macro processor