» Tanglu » Packages » aequorea » gnu-r

Software Packages in "aequorea", Subsection gnu-r

ess (13.09-1-1)
Emacs mode for statistical programming and data analysis
littler (0.1.5-1)
GNU R scripting and command-line front-end
r-base (3.0.2-1)
GNU R statistical computation and graphics system
r-base-core (3.0.2-1)
GNU R core of statistical computation and graphics system
r-base-dev (3.0.2-1)
GNU R installation of auxiliary GNU R packages
r-bioc-affy (1.38.1-1)
BioConductor methods for Affymetrix Oligonucleotide Arrays
r-bioc-affyio (1.28.0-1)
BioConductor tools for parsing Affymetrix data files
r-bioc-altcdfenvs (2.24.0-1)
BioConductor alternative CDF environments
r-bioc-annotationdbi (1.22.6-1)
GNU R Annotation Database Interface for BioConductor
r-bioc-biobase (2.20.0-1)
base functions for Bioconductor
r-bioc-biocgenerics (0.8.0-1)
generic functions for Bioconductor
r-bioc-biocinstaller (1.10.3-1)
Install/Update Bioconductor and CRAN Packages
r-bioc-biomart (2.18.0-1)
GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
r-bioc-biostrings (2.30.1-1)
GNU R string objects representing biological sequences
r-bioc-bsgenome (1.30.0-1)
BioConductor infrastructure for Biostrings-based genome data packages
r-bioc-cummerbund (1.2.0-2)
tool for analysis of Cufflinks RNA-Seq output
r-bioc-edger (3.2.4~dfsg-1)
Empirical analysis of digital gene expression data in R
r-bioc-genomicranges (1.14.3-1)
BioConductor representation and manipulation of genomic intervals
r-bioc-graph (1.38.3-1)
handle graph data structures for BioConductor
r-bioc-hypergraph (1.32.0-1)
BioConductor hypergraph data structures
r-bioc-iranges (1.20.6-1)
GNU R low-level containers for storing sets of integer ranges
r-bioc-limma (3.16.7~dfsg-1)
linear models for microarray data
r-bioc-makecdfenv (1.36.0-1b1)
BioConductor CDF Environment Maker
r-bioc-preprocesscore (1.22.0-1)
BioConductor collection of pre-processing functions
r-bioc-qvalue (1.34.0+dfsg-1)
GNU R package for Q-value estimation for FDR control
r-bioc-rsamtools (1.14.2-1)
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
r-bioc-rtracklayer (1.22.0-1)
GNU R interface to genome browsers and their annotation tracks
r-bioc-shortread (1.20.0-1)
GNU R classes and methods for high-throughput short-read sequencing data
r-bioc-xvector (0.2.0-1)
BioConductor representation and manpulation of external sequences
r-cran-abind (1.4-0-2)
GNU R abind multi-dimensional array combination function
r-cran-amelia (1.7.1-2)
GNU R package supporting multiple imputation of missing data
r-cran-amore (0.2-12-3)
GNU R: A MORE flexible neural network package
r-cran-base64enc (0.1-1-2)
GNU R package that provides tools for base64 encoding
r-cran-bayesm (2.2-5-1)
GNU R package for Bayesian inference
r-cran-bitops (1.0-6-1)
GNU R package implementing bitwise operations
r-cran-boolnet (1.61-2)
tools for assembling, analyzing and visualizing Boolean networks
r-cran-boot (1.3-9-1)
GNU R package for bootstrapping functions from Davison and Hinkley
r-cran-cairodevice (2.19-2)
GNU R Cairo/Gtk2 device driver package
r-cran-car (2.0-19-1)
GNU R Companion to Applied Regression by John Fox
r-cran-catools (1.14-1)
GNU R package providing various utility functions
r-cran-chron (2.3-44-1)
GNU R package for chronologically ordered objects
r-cran-class (7.3-9-1)
GNU R package for classification
r-cran-cluster (1.14.4-1)
GNU R package for cluster analysis by Rousseeuw et al
r-cran-coda (0.16-1-1)
Output analysis and diagnostics for MCMC simulations in R
r-cran-codetools (0.2-8-2)
GNU R package providing code analysis tools
r-cran-colorspace (1.2-2-1)
GNU R Color Space Manipulation
r-cran-combinat (0.0-8-4)
GNU R package with utilities for combinatorics
r-cran-date (1.2.33-2)
GNU R package for date handling
r-cran-dbi (0.2-7-1)
GNU R package providing a generic database interface
r-cran-deal (1:1.2-37-1)
Learning Bayesian Networks with Mixed Variables
r-cran-deldir (0.0-22-1)
GNU R Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
r-cran-deoptimr (1.0-1-1)
GNU R package for Diffential Evolution in pure R
r-cran-diagnosismed (0.2.3-3)
medical diagnostic test accuracy analysis toolkit
r-cran-dichromat (2.0.0-2)
Color schemes for dichromats
r-cran-digest (0.6.4-1)
GNU R package for 'hash digest' of R data structures
r-cran-domc (1.3.1-1)
GNU R parallel excution backend for %dopar% using multicore
r-cran-dosefinding (0.9-9-1)
Planning and Analyzing Dose Finding experiments
r-cran-dosnow (1.0.9-1)
GNU R parallel excution backend for %dopar% using snow
r-cran-downloader (0.3-1)
GNU R package for downloading files over http and https
r-cran-eco (3.1-6-1)
GNU R routines for Bayesian ecological inference
r-cran-effects (2.3.0-1)
GNU R graphical and tabular effects display for glm models
r-cran-epi (1.1.49-1)
GNU R epidemiological analysis
r-cran-epibasix (1.3-1)
GNU R Elementary Epidemiological Functions
r-cran-epicalc (
GNU R Epidemiological calculator
r-cran-epir (0.9-48-1)
GNU R Functions for analysing epidemiological data
r-cran-epitools (1:0.5-7-1)
GNU R Epidemiology Tools for Data and Graphics
r-cran-erm (0.14-0-6)
GNU R package for 'extended Rasch modelling'
r-cran-evaluate (0.5.1-1)
GNU R parsing and evaluation tools
r-cran-evd (2.3-0-1)
GNU R Functions for extreme value distributions
r-cran-fasianoptions (3010.79-1)
GNU R package for financial engineering -- fAsianOptions
r-cran-fassets (2110.79-2)
GNU R package for financial engineering -- fAssets
r-cran-fastcluster (1.1.11-1)
Fast hierarchical clustering routines for GNU R
r-cran-fbasics (3010.86-1)
GNU R package for financial engineering -- fBasics
r-cran-fbonds (2160.76-2)
GNU R package for financial engineering -- fBonds
r-cran-fcopulae (3000.79-2)
GNU R package for financial engineering -- fCopulae
r-cran-fexoticoptions (2152.78-2)
GNU R package for financial engineering -- fExoticOptions
r-cran-fextremes (3010.81-1)
GNU R package for financial engineering -- fExtremes
r-cran-fgarch (3010.82-1)
GNU R package for financial engineering -- fGarch
r-cran-fimport (3000.82-2)
GNU R package for financial engineering -- fImport
r-cran-fmultivar (2152.77-2)
GNU R package for financial engineering -- fMultivar
r-cran-fnonlinear (2160.77-2)
GNU R package for financial engineering -- fNonlinear
r-cran-foptions (3010.83-1)
GNU R package for financial engineering -- fOptions
r-cran-foreach (1.4.1-1)
GNU R foreach looping support
r-cran-foreign (0.8.57-1)
GNU R package to read/write data from other stat. systems
r-cran-formula (1.1-1-1)
GNU R package for extended model formulas
r-cran-fportfolio (2130.80-2)
GNU R package for financial engineering -- fPortfolio
r-cran-fregression (3010.78-1)
GNU R package for financial engineering -- fRegression
r-cran-ftrading (2160.77-2)
GNU R package for financial engineering -- fTrading
r-cran-funitroots (3010.78-1)
GNU R package for financial engineering -- fUnitRoots
r-cran-g.data (2.3-1)
GNU R package for delayed-data
r-cran-gam (1.08-1)
Generalized Additive Models for R
r-cran-gbm (2.1-1)
GNU R package "Generalized Boosted Regression Models"
r-cran-gdata (2.13.2-1)
GNU R package with data manipulation tools by Greg Warnes et al
r-cran-genabel (1.7-6-1)
GNU R package for genome-wide SNP association analysis
r-cran-genetics (1.3.8-1)
GNU R package for population genetics
r-cran-getopt (1.20.0-1)
GNU R package providing command-line parsing functionality
r-cran-ggplot2 (0.8.9-1.1)
implementation of the Grammar of Graphics
r-cran-gmaps (0.2-2)
GNU R support for producing geographic maps with grid graphics
r-cran-gmodels (
GNU R package with tools for model fitting by Greg Warnes et al
r-cran-gplots (2.11.3-1)
GNU R package with tools for plotting data by Greg Warnes et al
r-cran-gregmisc (2.1.5-1)
GNU R package with miscellaneous functions by Greg Warnes et al
r-cran-gss (2.1-0-1)
GNU R package for multivariate estimation using smoothing splines
r-cran-gtable (0.1.2-1.1)
Arrange grobs in tables
r-cran-gtools (3.1.1-1)
GNU R package with R programming tools by Greg Warnes et al
r-cran-haplo.stats (1.6.3-1)
GNU R package for haplotype analysis
r-cran-hdf5 (1.6.10-2)
GNU R package interfacing the NCSA HDF5 library
r-cran-hmisc (3.13-0-1)
GNU R miscellaneous functions by Frank Harrell
r-cran-hwriter (1.3-1)
HTML Writer - Outputs R objects in HTML format
r-cran-inline (0.3.13-1)
GNU R package to inline C, C++, Fortran functions from R
r-cran-int64 (1.1.2-2)
GNU R package for 64 bit integer types
r-cran-iterators (1.0.6-2)
GNU R iterator support for vectors, lists and other containers
r-cran-its (1.1.8-4)
GNU R package for handling irregular time series
r-cran-kernsmooth (2.23-10-2)
GNU R package for kernel smoothing and density estimation
r-cran-labeling (0.1-2)
GNU R Axis Labeling optimization
r-cran-lattice (0.20-24-1)
GNU R package for 'Trellis' graphics
r-cran-latticeextra (0.6-26-1)
GNU R package of additional graphical displays based on lattice
r-cran-lhs (0.10-1)
GNU R package "lhs: Latin Hypercube Samples"
r-cran-lme4 (1.0-5-1)
GNU R package for linear mixed effects model fitting
r-cran-lmtest (0.9.32-1)
GNU R package for diagnostic checking in linear models
r-cran-lpsolve (5.6.7-2)
GNU R package providing linear program solvers
r-cran-maldiquant (1.8-1)
GNU R package for quantitative analysis of mass spectrometry data
r-cran-maldiquantforeign (0.5.1-1)
GNU R package providing import/export routines for MALDIquant
r-cran-mapdata (2.2-2-1)
GNU R support for producing geographic maps (supplemental data)
r-cran-mapproj (1.2-1-1)
GNU R support for cartographic projections of map data
r-cran-maps (2.3-2-1)
GNU R support for producing geographic maps
r-cran-maptools (1:0.7-38-1) [non-free]
GNU R Tools for reading and handling spatial objects
r-cran-mass (7.3-29-1)
GNU R package of Venables and Ripley's MASS
r-cran-matchit (2.4-20-1)
GNU R package of nonparametric matching methods
r-cran-matrix (1.1-0-1)
GNU R package of classes for dense and sparse matrices
r-cran-mcmcpack (1.3-3-1)
R routines for Markov chain Monte Carlo model estimation
r-cran-medadherence (1.03-1)
GNU R Medication Adherence: Commonly Used Definitions
r-cran-memoise (0.1-2)
Memoise functions
r-cran-mfilter (0.1.3-1)
GNU R package providing miscellaneous time series filters
r-cran-mgcv (1.7-27-1)
GNU R package for multiple parameter smoothing estimation
r-cran-minqa (1.2.1-1)
GNU R package for quadratic optimisation without derivatives
r-cran-misc3d (0.8-4-1)
GNU R collection of 3d plot functions and rgl-based isosurfaces
r-cran-mnormt (1.4-7-1)
GNU R package providing multivariate normal and t distribution
r-cran-mnp (2.6-3-1)
GNU R package for fitting multinomial probit (MNP) models
r-cran-msm (1.1.4-1)
GNU R Multi-state Markov and hidden Markov models in continuous time
r-cran-multcomp (1.3-1-1)
GNU R package for multiple comparison procedures
r-cran-multicore (0.1-7-2)
GNU R parallel processing on multi-core or multi-cpu machines
r-cran-munsell (0.4.2-1)
Munsell colour system
r-cran-mvtnorm (0.9-9996-1)
GNU R package to compute multivariate Normal and T distributions
r-cran-nlme (3.1.113-1)
GNU R package for (non-)linear mixed effects models
r-cran-nnet (7.3-7-1)
GNU R package for feed-forward neural networks
r-cran-numderiv (2012.9-1-1)
GNU R package for accurate numerical derivatives
r-cran-nws (
GNU R package for distributed programming via NetWorkSpaces
r-cran-permute (0.7-0-2)
R functions for generating restricted permutations of data
r-cran-plotrix (3.4-7-1)
GNU R package providing various plotting functions
r-cran-plyr (1.8-1)
Tools for splitting, applying and combining data
r-cran-polspline (1.1.9-1)
GNU R package providing polynomial spline fitting
r-cran-polyclip (1.2-0-1)
GNU R Polygon Clipping
r-cran-polycub (0.4-1-1)
GNU R Cubature over Polygonal Domains
r-cran-proto (0.3-10-1)
Prototype object-based programming
r-cran-pscl (1.04.4-2)
GNU R package for discrete data models
r-cran-psy (1.1-1)
GNU R procedures for psychometrics
r-cran-pvclust (1.2-2-2)
Hierarchical Clustering with P-Values via Multiscale Bootstrap
r-cran-pwt (7.1.1-1)
GNU R package for the Penn World Tables
r-cran-qtl (1.27-10-1)
GNU R package for genetic marker linkage analysis
r-cran-quadprog (1.5-5-1)
GNU R package for solving quadratic programming problems
r-cran-randomforest (4.6-7-1)
GNU R package implementing the random forest classificator
r-cran-raschsampler (0.8-6-1)
GNU R package for sampling binary matrices with fixed margins
r-cran-rcmdr (2.0-0-1)
GNU R platform-independent basic-statistics GUI
r-cran-rcolorbrewer (1.0-5-2)
GNU R package providing suitable color palettes
r-cran-rcpp (0.10.6-1)
GNU R package for Seamless R and C++ Integration
r-cran-rcpparmadillo (0.3.920.3-1)
GNU R package for Armadillo C++ linear algebra library
r-cran-rcppeigen (
GNU R package for Eigen templated linear algebra
r-cran-rcurl (1.95-4.1-1)
GNU R General network (HTTP/FTP/...) client interface
r-cran-readbrukerflexdata (1.7-1)
GNU R package to read Bruker Daltonics *flex format files
r-cran-readmzxmldata (2.7-1)
GNU R package to read mass spectrometry data in mzXML format
r-cran-relimp (1.0-3-2)
GNU R package for inference on relative importance of regressors
r-cran-reshape (0.8.4-2)
Flexibly reshape data
r-cran-reshape2 (1.2.2-1)
Flexibly reshape data: a reboot of the reshape package
r-cran-rggobi (2.1.19-2)
GNU R package for the GGobi data visualization system
r-cran-rgl (0.93.991-1)
GNU R package for three-dimensional visualisation using OpenGL
r-cran-rglpk (0.5-2-1)
GNU R interface to the GNU Linear Programing Kit
r-cran-rgtk2 (2.20.25-2)
GNU R binding for Gtk2
r-cran-rjags (3.10-1)
R interface to the JAGS Bayesian statistics package
r-cran-rjava (0.9-4-1)
GNU R low-level interface to Java
r-cran-rjson (0.2.13-1)
GNU R package for converting between R and JSON objects
r-cran-rmpi (0.6-3-1b1)
GNU R package interfacing MPI libraries for distributed computing
r-cran-rms (4.1-0-1)
GNU R regression modeling strategies by Frank Harrell
r-cran-rmysql (0.9-3-2)
GNU R package providing a DBI-compliant interface to MySQL
r-cran-rniftilib (0.0-32-1)
GNU/R interface to NIFTICLIB
r-cran-robustbase (0.9-10-1)
GNU R package providing basic robust statistics
r-cran-rocr (1.0-5-1)
GNU R package to prepare and display ROC curves
r-cran-rodbc (1.3-10-1)
GNU R package for ODBC database access
r-cran-rpart (4.1-3-1)
GNU R package for recursive partitioning and regression trees
r-cran-rquantlib (0.3.10-3)
GNU R package interfacing the QuantLib finance library
r-cran-rsclient (0.7-2-1)
GNU R package for 'hash digest' of R data structures
r-cran-rserve (1.7-3-1)
GNU R Rserve tcp/ip server and sample clients
r-cran-rsprng (1.0-3)
GNU R interface to SPRNG (Scalable Parallel RNGs)
r-cran-rsqlite (0.11.2-1)
Database Interface R driver for SQLite
r-cran-rsymphony (0.1-17-1)
GNU R interface to the SYMPHONY MILP solver
r-cran-runit (0.4.26-2)
GNU R package providing unit testing framework
r-cran-sandwich (2.3-0-1)
GNU R package for model-robust standard error estimates
r-cran-scales (0.2.3-1)
Scale functions for graphics
r-cran-scatterplot3d (0.3-33-2)
GNU R package for Visualizing Multivariate Data
r-cran-slam (0.1-30-1)
GNU R sparse lighweight arrays and matrices package
r-cran-sm (2.2-5.3-1)
GNU R package for kernel smoothing methods
r-cran-sn (0.4-18-1)
GNU R package providing skew-normal and skew-t distributions
r-cran-snow (1:0.3.13-1)
GNU R package for 'simple network of workstations'
r-cran-sp (1:1.0-9-1)
GNU R classes and methods for spatial data
r-cran-sparsem (1.03-1)
GNU R package for basic linear algebra for sparse matrices
r-cran-spatial (7.3-7-1)
GNU R package for spatial statistics
r-cran-spatstat (1.35-0-1)
GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests
r-cran-spc (1:0.4.2-1)
GNU R Statistical Process Control
r-cran-stabledist (0.6-6-1)
GNU R package for stable distribution functions
r-cran-statmod (1.4.18-1)
GNU R package providing various statistical modeling functions
r-cran-stringr (0.6.2-1)
Make it easier to work with strings
r-cran-strucchange (1.5-0-1)
GNU R package for structural change regression estimation
r-cran-surveillance (1.2-1-4 [amd64], 1.2-1-3 [i386]) [contrib]
development and the evaluation of epidemiological outbreak detection algorithms
r-cran-survival (2.37-4-2)
GNU R package for survival analysis
r-cran-tcltk2 (1.2-9-1)
GNU R package for Tcl/Tk additions
r-cran-teachingdemos (2.9-1)
GNU R Demonstrations for teaching and learning
r-cran-tensor (1.5-1)
GNU R Tensor product of arrays
r-cran-testthat (0.7.1-1)
GNU R testsuite
r-cran-tgp (2.4-9-1)
GNU R package "tgp: Bayesian treed Gaussian process models"
r-cran-th.data (1.0-2-1)
GNU R package for datasets by Torsten Hothorn
r-cran-timedate (3010.98-1)
GNU R package for financial engineering -- timeDate
r-cran-timeseries (3010.97-1)
GNU R package for financial engineering -- timeSeries
r-cran-tkrplot (0.0.23-2)
GNU R embedded Tk plotting device package
r-cran-tseries (0.10-32-1)
GNU R package for time-series analysis and comp. finance
r-cran-urca (1.2-8-1)
GNU R package providing unit root and cointegration tests
r-cran-vcd (1:1.2-13-2)
GNU R Visualizing Categorical Data
r-cran-vegan (2.0-7-1)
Community Ecology Package for R
r-cran-vgam (0.9-1-1)
GNU R package for estimating vector generalized additive models
r-cran-wdi (2.4-1)
GNU R package for accessing the World Development Indicators
r-cran-xml (3.98-1.1-1)
GNU R package for XML parsing and generation
r-cran-xtable (1:1.7-1-1)
GNU R coerce data to LaTeX and HTML tables
r-cran-xts (0.9-7-1)
GNU R package for time series analysis -- xts
r-cran-zelig (4.1-3-2)
GNU R package providing a unified front-end for estimating statistical models
r-cran-zoo (1.7-10-1)
GNU R package for totally ordered indexed observations
r-mathlib (3.0.2-1)
GNU R standalone mathematics library
r-other-bio3d (1.1-5-1)
GNU R package for biological structure analysis
r-other-mott-happy (2.1-7)
GNU R package for fine-mapping complex diseases
r-other-rot (1.2-2)
GNU R package of few tools needed by OpenTURNS
r-recommended (3.0.2-1)
GNU R collection of recommended packages [metapackage]